Taxonomy: Shigella sp. D9


Full Lineage (Corrected)

Domain Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Order Enterobacteriales
Family Enterobacteriaceae
Genus Escherichia
Species Escherichia coli
SubSpecies Shigella sp. D9

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We processed the genomes included in Metaref with PhyloPhlAn, a pipeline developed for confidently detecting inconsistencies between the microbial taxonomy and phylogeny that can be explained only assuming taxonomic mislabeling. Using the pipeline we were able to detect these inconsistencies and provide more plausible assignments when this was possible at high confidence. The pipeline also refines the assignments by providing species-level placements for taxa previously assigned at genus-level only


d__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Enterobacteriales.f__Enterobacteriaceae.g__Shigella.s__?.t__t645058835

External Links:
IMG: Genome Page

Downloads:
ChocoPhlan Gene Report Table


Genome Detail

Number of Genes: 4526
taxonomy levelUnique markers
Clade object (genome) 27
taxonomy levelcore
Escherichia coli (species)624
Escherichia (genus)2659
Enterobacteriaceae (family)34