Gene Family Page

Family IMG ID650315495
Gene TypeProtein
Family TypeCSCORE
Gene Count3
Sequences Fasta file
Gene Table Tab-Delimited file

Associated Clade GenomesScore
Staphylococcus lugdunensis
(Species)
3 / 3 1.0
Gene Description (up to the top 5)Counts
capsular polysaccharide synthesis enzyme (pseudogene)1
capsular polysaccharide biosynthesis protein CapD1
Capsular polysaccharide synthesis enzyme Cap8D1

DbDescriptionCounts
KEGG
COG COG1086 Predicted nucleoside-diphosphate sugar epimerases2
EC
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This genome tree highlights the genomes of the query gene family (red dots), as well as the genomes, if any, that have homologs that are not included in the family (cyan dots).

A marker gene family has no homologs outside itself, therefore, no cyan dots would be observed.

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HMP Metagenomic Data


Prevalence
Bar Chart


Log(Relative Abundance, %)


Sister Gene Families


CSCORE 642562165: Staphylococcus haemolyticus (Species)
CSCORE 651298290: Staphylococcus hominis hominis C80 (SubSpecies)
CSCORE 645468590: Staphylococcus epidermidis M23864:W1 (SubSpecies)
CSCORE 637695400: Staphylococcus saprophyticus (Species)
CSCORE 646054415: Staphylococcus aureus (Species)
CSCORE 643727951: Staphylococcus carnosus (Species)
CSCORE 647823388: Granulicatella elegans (Species)
CSCORE 650908733: Bacillus coagulans 2-6 (SubSpecies)
CSCORE 650284651: Planococcaceae (Family)
CSCORE 644615287: Bacillus mycoides DSM 2048 (SubSpecies)
CSCORE 643657666: Macrococcus (Genus)
CSCORE 646090242: Granulicatella adiacens (Species)
CSCORE 637421977: Bacillus cereus AH676 (SubSpecies)
CSCORE 644664866: Bacillus thuringiensis sv pakistani t13001 (SubSpecies)
CSCORE 644626713: Bacillus pseudomycoides (Species)
CSCORE 651642578: Haloplasmataceae (Family)
CSCORE 644565965: Bacillus cereus Rock3-44 (SubSpecies)
CSCORE 642982621: Bacillus coahuilensis (Species)
CSCORE 646335035: Clostridium difficile (Species)
CSCORE 648785292: Veillonella atypica (Species)
CSCORE 642849436: Clostridium botulinum BoNT/A1, ATCC 19397 (SubSpecies)
CSCORE 647985961: Veillonella parvula (Species)
CSCORE 637282219: Bacillus cereus Rock3-42 (SubSpecies)
CSCORE 648780023: Finegoldia (Genus)
CSCORE 648681333: Lactobacillus salivarius (Species)
CSCORE 641380196: Bacillus weihenstephanensis (Species)
CSCORE 644493237: Bacillus cereus R309803 (SubSpecies)
CSCORE 644632750: Bacillus pseudomycoides (Species)
CSCORE 650813096: Streptococcus suis ST3 (SubSpecies)
CSCORE 640913596: Streptococcus gordonii (Species)
CSCORE 642090958: Clostridium novyi (Species)
CSCORE 648046069: Croceibacter (Genus)
CSCORE 648013928: Clostridium carboxidivorans (Species)
CSCORE 651496346: Haemophilus parainfluenzae (Species)
CSCORE 650263267: Streptococcus pseudoporcinus (Species)
CSCORE 643899819: Bacillus subtilis (Species)
CSCORE 650420702: Halanaerobiaceae (Family)
CSCORE 639718845: Gramella (Genus)
CSCORE 641528264: Acholeplasma (Genus)
CSCORE 644276181: Anaerococcus tetradius (Species)
CSCORE 642096521: Clostridium perfringens NCTC 8239 (SubSpecies)
CSCORE 644422739: Chryseobacterium (Genus)
CSCORE 644995616: Anaerococcus prevotii (Species)
CSCORE 650809586: Clostridium botulinum BKT015925 (SubSpecies)
CSCORE 643577797: Haemophilus parasuis (Species)
CSCORE 645614356: Clostridium carboxidivorans (Species)
CSCORE 640105253: Streptococcus sanguinis (Species)
CSCORE 640614777: Cyclobacteriaceae (Family)
CSCORE 648405544: Prevotella amnii (Species)
CSCORE 637387001: Clostridium tetani (Species)
CSCORE 650854550: Streptococcus parauberis (Species)
CSCORE 644182605: Catenibacterium (Genus)
CSCORE 642464217: Clostridium perfringens type D - JGS1721 (SubSpecies)
CSCORE 643577065: Clostridium kluyveri (Species)
CSCORE 650900522: Streptococcus pasteurianus (Species)
CSCORE 643112683: Clostridium nexile (Species)
CSCORE 647711104: Enterococcus casseliflavus (Species)
CSCORE 643460389: Shewanella baltica OS223 (SubSpecies)
CSCORE 651669788: Prevotella nigrescens (Species)
CSCORE 650182042: Solobacterium (Genus)
CSCORE 641053193: Ruminococcus gnavus (Species)
CSCORE 650337131: Streptococcus infantis (Species)
CSCORE 650230216: Vibrio caribbenthicus (Species)
CSCORE 642325463: Anaerofustis (Genus)
CSCORE 638894829: Vibrio splendidus 12B01 (SubSpecies)
CSCORE 637441094: Prochlorococcus marinus marinus CCMP1375 (SubSpecies)
CSCORE 649971732: Cellulophaga (Genus)
CSCORE 647194038: Vibrio orientalis (Species)
CSCORE 646168875: Enhydrobacter (Genus)
CSCORE 643431535: Acinetobacter baumannii AB056 (SubSpecies)
CSCORE 648643974: Prevotella bryantii (Species)
CSCORE 643718383: Campylobacter lari (Species)
CSCORE 646045698: Fusobacterium periodonticum (Species)
CSCORE 637397174: Vibrio parahaemolyticus (Species)
CSCORE 650302544: Campylobacter upsaliensis (Species)
CSCORE 647374216: Campylobacter jejuni (Species)
CSCORE 650482768: Weeksella (Genus)
CSCORE 639005045: Polaribacter irgensii (Species)
CSCORE 647879455: Bacteroides ovatus (Species)
CSCORE 649860419: Taylorella (Genus)
CSCORE 647931660: Prevotella melaninogenica (Species)
CSCORE 640786074: Methanococcus vannielii (Species)